SPEN haploinsufficiency causes a neurodevelopmental disorder overlapping proximal 1p36 deletion syndrome with an episignature of X chromosomes in females
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Authors
Radio, Francesca Clementina
Pang, Kaifang
Ciolfi, Andrea
Levy, Michael A.
Hernández-García, Andrés
Pedace, Lucia
Pantaleoni, Francesca
Liu, Zhandong
de Boer, Elke
Jackson, Adam
Issue Date
2021-03-04
Type
Journal Article
Language
eng
Keywords
Child , Humans , Adolescent , Female , Male , Young Adult , *obesity , *neurodevelopmental disorder , Child, Preschool , Chromosome Deletion , Phenotype , *1p36 , *distal 1p36 deletion syndrome , *DNA methylome analysis , *episignature , *genotype-phenotype correlations , *proximal 1p36 deletion syndrome , *SPEN , *X chromosome , Autism Spectrum Disorder/genetics/pathology , Chromosome Disorders/*genetics/physiopathology , Chromosomes, Human, Pair 1/*genetics , Chromosomes, Human, X/*genetics , DNA Methylation/genetics , DNA-Binding Proteins/*genetics , Epigenesis, Genetic/genetics , Haploinsufficiency/genetics , Intellectual Disability/genetics/physiopathology , Neurodevelopmental Disorders/genetics/physiopathology , RNA-Binding Proteins/*genetics
Alternative Title
Deletion 1p36 (del1p36) syndrome is the most common human disorder resulting from a terminal autosomal deletion. This condition is molecularly and clinically heterogeneous. Deletions involving two non-overlapping regions, known as the distal (telomeric) and proximal (centromeric) critical regions, are sufficient to cause the majority of the recurrent clinical features, although with different facial features and dysmorphisms. SPEN encodes a transcriptional repressor commonly deleted in proximal del1p36 syndrome and is located centromeric to the proximal 1p36 critical region. Here, we used clinical data from 34 individuals with truncating variants in SPEN to define a neurodevelopmental disorder presenting with features that overlap considerably with those of proximal del1p36 syndrome. The clinical profile of this disease includes developmental delay/intellectual disability, autism spectrum disorder, anxiety, aggressive behavior, attention deficit disorder, hypotonia, brain and spine anomalies, congenital heart defects, high/narrow palate, facial dysmorphisms, and obesity/increased BMI, especially in females. SPEN also emerges as a relevant gene for del1p36 syndrome by co-expression analyses. Finally, we show that haploinsufficiency of SPEN is associated with a distinctive DNA methylation episignature of the X chromosome in affected females, providing further evidence of a specific contribution of the protein to the epigenetic control of this chromosome, and a paradigm of an X chromosome-specific episignature that classifies syndromic traits. We conclude that SPEN is required for multiple developmental processes and SPEN haploinsufficiency is a major contributor to a disorder associated with deletions centromeric to the previously established 1p36 critical regions.
Description
Citation
Radio, F. C. et al. (2021) ‘SPEN haploinsufficiency causes a neurodevelopmental disorder overlapping proximal 1p36 deletion syndrome with an episignature of X chromosomes in females.’, American journal of human genetics, 108(3), pp. 502–516. doi: 10.1016/j.ajhg.2021.01.015.
Publisher
Cell Press
Journal
American journal of human genetics